Hi Jason, * jkyano <jky...@scripps.edu> [2003-10-01 11:51] wrote:
> I am looking for a free program or script that can spit out sidechain > hydrophobicity in the B factor column so that I can color a surface by > hydrophobicity using the color_b.py script. I have a data2bfactor.py script that will alter the B-values of a molecule within PyMOL based on an file of data. Look in http://adelie.biochem.queensu.ca/~rlc/work/pymol for more information. I have a FORTRAN program for calculating the Kyte and Doolittle hydrophobicity values. Look in http://adelie.biochem.queensu.ca/~rlc/work/bin I should get around to converting that ugly FORTRAN into python! > PS has anyone tweeked the script to go from green to yellow/white? Ask and ye shall receive... I've just updated the script to include a 'gw' (green -> white) and a 'gy' (green -> yellow) gradient. Also in: http://adelie.biochem.queensu.ca/~rlc/work/pymol Cheers, Rob -- Robert L. Campbell, Ph.D. <r...@post.queensu.ca> Senior Research Associate phone: 613-533-6821 Dept. of Biochemistry, Queen's University, fax: 613-533-2497 Kingston, ON K7L 3N6 Canada http://adelie.biochem.queensu.ca/~rlc PGP Fingerprint: 9B49 3D3F A489 05DC B35C 8E33 F238 A8F5 F635 C0E2
