Wolfram,

select m1cha, mole1 and chain a
select m2cha, mole2 and chain a

You can then perform operations such as:

color cyan, m1cha
color yellow, m2cha
align m1cha, m2cha

Cheers,
Warren


--
mailto:war...@delanoscientific.com
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154 
Fax   (650)-593-4020

> -----Original Message-----
> From: pymol-users-ad...@lists.sourceforge.net [mailto:pymol-users-
> ad...@lists.sourceforge.net] On Behalf Of Wolfram Tempel
> Sent: Tuesday, October 14, 2003 5:27 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] atom (sub) selections
> 
> Hi,
> the documentation states that selections will span across multiple
> objects. However, how do I accomplish this:
> I load two (homologous, aligned) coordinate files mole1.pdb and
> mole2.pdb both of witch have a chain A. Now I would like to create a
> selection consisting of the A chain of mole1 but NOT mole2. Can it be
> done without having to modify the coordinate files?
> Thanks!
> 
> 
> 
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