Hi List! I did a polyalanine in helix ss. I tested: 1: dss (ok) 2: run stride_ss.py, stride2pymol (ok) 3: dssp (from rtools) (???)
Case (1) differs a little bit from (2) in N term. Case (3) seems not to work. Or, maybe, I do not know how to use it. Tried via menu and via command dssp. Got the same thing: two new objects (helix and sheet) that show nothing! In a crystallographic protein (HIV protease), (1) gave-me a better (and faster) result than (2). (3) still gave-me nothing (except the ref to Dssp, which is properly installed in my box). I really want to see dssp working. Anyway, all that said, what I want to do is loading a multi-pdb file and see dss calculating different ss for each frame. How could I do it? Cheers, - -------------------------- Alan Wilter Sousa da Silva -------------------------- B.Sc. - Dep. Física - UFPA M.Sc. - Dep. Física - PUC/RJ D.Sc. - IBCCF/UFRJ Bolsista Pesquisador LAC-INPE São José dos Campos (SP), Brasil www.lac.inpe.br/~alan
