Just another little tip:
At the pymol GUI click at the "setting" menu and then "edit all".
There you will find all the variables you can set with very obvious names.
Hope it helps.
Mario Sanches
Luca Jovine wrote:
Hi Mark,
(1) Does anyone know how to adjust the radius of the cartoon loops?
set cartoon_loop_radius = <value>
(2) Is there a comprehensive list of these variable somewhere on-line or
in the program files that I can access? I can't find these kind of
details in the on-line manual/reference and I feel stupid asking this
kind
of basic question to everyone.
You can define a new function "setting_list" in a .py file (for example
"setting_list.py"):
def setting_list():
list = setting.get_name_list()
for name in list:
print "%s => %s" % (name, setting.get_setting_text(name))
cmd.extend('setting_list',setting_list)
then simply type the following from within PyMOL:
PyMOL> run setting_list.py
PyMOL> setting_list
Hope this helps - Luca
--------------------------------------------------------
Luca Jovine, Ph.D.
Brookdale Department of Molecular, Cell & Developmental Biology
Mount Sinai School of Medicine
Annenberg Building, Room 25-18
One Gustave L. Levy Place, New York, NY 10029-6574, USA
Voice: +1.212.241-8620 FAX: +1.509.356-2832
E-Mail: lucajov...@mac.com - luca.jov...@mssm.edu
W3: http://www.mssm.edu/students/jovinl02
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--
Mario Sanches, PhD Student
Protein Crystallography Group
São Paulo University, São Carlos Physics Institute
Phone: +55 (16) 273 9868
sanc...@if.sc.usp.br
