Alex
try typing:
dss
this will assign secondary structure to your PDB and then the cartoon
will show you the sheets and helices you desire.
Scott
On Feb 19, 2004, at 1:44 PM, ALEX DAJKOVIC wrote:
dear all,
i am new to pymol and i have a question about cartoons.
i saw the demo of cartoon ribbons and really liked it, but i haven't
been able to get my protein displayed that way. when i give the
command
"cartoon automatic" all i get is a simple line that apparently traces
the backbone of my protein chain. cartoon loop does the same thing.
with "cartoon tube" i get a thicker line. how do i set the parameters
so that i get nice helices and sheets like the ones showed in the demo?
thanks,
alex
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Scott Classen, Ph.D.
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Department of Molecular & Cell Biology
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