Warren,

Exactly what I needed!

cheers

Dan


On 5 Apr 2004, at 23:08, pymol-users-requ...@lists.sourceforge.net wrote:

Message: 10
From: "Warren DeLano" <war...@delanoscientific.com>
To: "'Todd Geders'" <ged...@purdue.edu>,
        "'Ann Mullin'" <amul...@tulane.edu>
Cc: <pymol-users@lists.sourceforge.net>
Subject: RE: [PyMOL] biological unit question
Date: Mon, 5 Apr 2004 13:07:13 -0700

Todd,

Try MacPyMOL for the full PYMOL effect.  http://delsci.com/macpymol

There is also a new command in the 0.95 series:

   split_states object-name

which will spread a PDB "biological unit" (or any multi-state object --
including SD files) over a series of independent objects. This makes it possible to interact with such objects more naturally than with "all_states
= 1".

   load 1c8e.pdb1, 1c8e
   split_states 1c8e
   delete 1c8e
   zoom
   spectrum b
   hide lines
   set cartoon_sampling,3
   show cartoon
   bg_color grey70
   set hash_max, 150
   ray
...
   orient
   zoom complete=1
   ray

image & screen-shot at:

  http://delsci.com/img/1c8e.jpg
  http://delsci.com/img/1c8e-screen.jpg

Note that looking at large systems such as this (255300 atoms) may take some extra RAM -- 1.5 GB is recommended for this task, and it still takes a dual
2 Ghz G5 85 seconds to render...

Cheers,
Warren


Dr. Daniel James White BSc. (Hons.) PhD
Cell Biology
Department of biological and environmental science
PO Box  35
University of Jyväskylä
Jyväskylä FIN 40014
Finland
+358 14 260 4183 (work)
+358 468102840 (new mobile)
NEW PHONE NUMBER!!!

http://www.chalkie.org.uk
d...@chalkie.org.uk
wh...@cc.jyu.fi


Reply via email to