Hi Hanspeter, If you want to use a stock pdb that does not contain chain IDs, you should create the object using either a residue or atom selection. For example (using residue ids for kinesin) create kin=(/1BG2///3:325/)
However, for your convenience I've attached a modified pdb that contains different chain IDs for each molecule in the PDB. kinesin = A ADP = B acetate = C water = W The new PDB was made using MOLEMAN2 (from the Uppsala Software Factory - http://alpha2.bmc.uu.se/~gerard/manuals/) Saturday, April 17, 2004, 1:03:55 PM, you wrote: HN> I'm trying to create an object of a protein from a PDB file that doesn't HN> give a chain ID (pdb is 1BG2). HN> I normally do something like: HN> create atub=(/1jff//a/) HN> to pull a specific chain out of a PDB file, but 1BG2 doesn't have a chain HN> name. And if i use "create kin=(/1BG2////)", the object kin gets ALL the HN> elements from 1BG2, including the waters, nucleotide, and ions, which is HN> exactly what I'm trying to not do. HN> How can I create an object out from a nameless chain? HN> Hanspeter HN> ------------------------------------------------------- HN> This SF.Net email is sponsored by: IBM Linux Tutorials HN> Free Linux tutorial presented by Daniel Robbins, President and CEO of HN> GenToo technologies. Learn everything from fundamentals to system HN> administration.http://ads.osdn.com/?ad_id=1470&alloc_id=3638&op=click HN> _______________________________________________ HN> PyMOL-users mailing list HN> PyMOL-users@lists.sourceforge.net HN> https://lists.sourceforge.net/lists/listinfo/pymol-users
1bg2_chained.pdb
Description: Protein Databank data
