Hi PyMOLers
I have a bunch of structures, for which I have calculated electrostatic potential maps (using Gromacs and MEAD). I can easily load the structures and corresponding maps into PyMOL and display a color coded surface. But when I try to align the structures, only the atomic coordinates are transformed - the electrostatic maps remain in their original orientations. As PyMOL update the surfaces after the alignment, the resulting surface colors are completely wrong. Doing things in another order doesn't help. As far as I can see from a posting from March 3rd (by John Eksterowicz), the problem is exactly the same for a density map. In my case, the workaround is to align all the structures before I do the electrostatic calculation - but it would be better if the maps could be assigned to the coordinate system of a structure. In this way, the maps would still be vaild after a 3D-alignment. Is there a way to do this? Best regards Esben
