Are you using the same platform for both Grasp and Pymol? I don't think that big-endian maps (written by an SGI computer) can be read by a little-endian platform, such as a x86 based PC.
- Esben > > The problem is getting the phi map in grasp. Can somebody > explain me how to do it? > > This is what we did and worked (we now using Delphi), try it. > -------------------------------------------------------------- > ------------ > *On the SGI computers: > 1) Start up the computer, log in and in a command line > prompt, change the > directory to where the .pdb fi > le, .siz file and .crg files are located. > 2) Run grasp (command: /hhmi/software/grasp/grasp) > 3) Open up the menu by right-clicking on the window > 4) With the menu open, right-click on the Read option. > 5) Right-click on the PDB File option and load the .pdb file. > 6) Open the read menu again (steps 3-4), and select the > Radius/Charge > File option, then load the raidus > file. Repeat again, loading the charge file. > 7) Open the main menu, click on display, show, molecular surface. > 8) Open the main menu, click on calculate, new potential map. > 9) Open the main menu, click on calculate, Pot. via map at > surface/atoms > 10) Open the main menu, click on write, potential map, > internal map, let > me enter it. In the command lin > e prompt, type in the name of the file (namefile.phi) > > > > =========================================== > Yu Chen > Howard Hughes Medical Institute > Chemistry Building, Rm 182 > University of Maryland at Baltimore County > 1000 Hilltop Circle > Baltimore, MD 21250 > > phone: (410)455-6347 (primary) > (410)455-2718 (secondary) > fax: (410)455-1174 > email: c...@hhmi.umbc.edu > =========================================== > > > > ------------------------------------------------------- > This SF.Net email is sponsored by: SourceForge.net Broadband > Sign-up now for SourceForge Broadband and get the fastest > 6.0/768 connection for only $19.95/mo for the first 3 months! > http://ads.osdn.com/?ad_id=2562&alloc_id=6184&op=click > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
