> Does anyone know of a way to embed coordinates within a pymol script? Have you seen cmd.read_pdbstr() and its companion cmd.get_pdbstr()?
-michael > I'd like to be able to programmatically generate a self-contained pymol > script which loads the embedded coords, defines selections, and > highlights selections with colors/rendering. The immediate use for this > is to write a CGI which returns a pymol script over http. Thus, the > coordinates cannot be expected to exist on the client side (and, in my > case, are model coordinates, not a PDB entry). > > RasMol provides the 'load pdb inline' command which loads a PDB file > which appears at the end of the script. I'd like something similar for > PyMOL, preferably generalized to multiple structures. An extension to > load in which the filename could be '<<TAG' a la sh or perl (gasps heard > on the list) would do the trick. > > Thanks, > Reece > -- > Reece Hart, Ph.D. r...@gene.com, http://www.gene.com/ > Genentech, Inc. 650-225-6133 (voice), -5389 (fax) > Bioinformatics and Protein Engineering > 1 DNA Way, MS-93 http://www.in-machina.com/~reece/ > S. San Francisco, CA 94080-4990 re...@in-machina.com, GPG: 0x25EC91A0 > >
