I have almost got the coloring working fast, but I have one last
problem. I am just loading a pdb, then I am wanting to go through and
set the 'q' variable for each atom to the value I am wanting to color
on. How do I get a chempy handle on the molecule being displayed?
'get_model' seems to return a copy of the chempy model being displayed.
Thanks,
Charlie
Warren DeLano wrote:
Charles,
The fastest way to color by value is to have the value in the temperature
factor or occupany column and then use the spectrum command. For example:
spectrum b
spectrum b, blue_white_red
spectrum b, blue_white_red, minimum=5, maximum=50
Etc.
Cheers,
Warren
--
mailto:war...@delsci.com
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154
Fax (650)-593-4020
-----Original Message-----
From: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
Charles Moad
Sent: Monday, August 23, 2004 5:50 AM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Fast Coloring
I am working on a plugin that entails coloring residues
based on a value. Right now creating a new color for each
residue and setting the color corresponding works, BUT it is
very inefficient and takes more than a tolerable amount of
time to display. Is there a better approach?
It is possible to assign a procedural color to the protein?
Thanks,
Charlie
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