Hi, I was wondering if PyMOL has some simple modeling functionalities, such as rotate through a particular bond (change the dihedral angle), delete/form bonds, superimpose, etc., via mouse. These functions will be particularly useful for molecular modeling besides the wonderful graphics.
Also, when I load certain PDB files, PyMOL automatically assign many bonds which are not supposed to be there. I understand it may base on distance rule for assigning molecular bonds; however, is there any way I can change the behavior of this? Thanks, Frank
