Hi, I download the following version. And setup it. My os is fedora core3 .
http://delsci.com/beta/ PyMOL 0.98beta05 Linux: pymol-0_98beta05-bin-linux-x86.tgz ~10 MB But, when I run pymol, error occurs How can I run it successfully? --------------------------------------------------------------------------------------- OpenGL-based graphics engine: GL_VENDOR: Mesa project: www.mesa3d.org GL_RENDERER: Mesa GLX Indirect GL_VERSION: 1.2 (1.5 Mesa 6.1) Exception in thread Thread-1: Traceback (most recent call last): File "/usr/local/pymol/ext/lib/python2.2/threading.py", line 408, in __bootstrap self.run() File "/usr/local/pymol/ext/lib/python2.2/threading.py", line 396, in run apply(self.__target, self.__args, self.__kwargs) File "/usr/local/pymol/modules/pmg_tk/__init__.py", line 33, in run PMGApp(balloon_state='both').run() File "/usr/local/pymol/modules/pmg_tk/AbstractApp.py", line 44, in __init__ self.root = Tk() File "/usr/local/pymol/ext/lib/python2.2/lib-tk/Tkinter.py", line 1495, in __init__ self.tk = _tkinter.create(screenName, baseName, className) TclError: Can't find a usable init.tcl in the following directories: /home/local/warren/ext/lib/tcl8.4 /.4 /.4 /.4 /y /y /.y ///.4 This probably means that Tcl wasn't installed properly. PyMOL: abrupt program termination. =---------------------------------------------------------------------------------- 在 2004-11-24三的 20:41 -0800，pymol-users-requ...@lists.sourceforge.net写道： > Send PyMOL-users mailing list submissions to > pymol-users@lists.sourceforge.net > > To subscribe or unsubscribe via the World Wide Web, visit > https://lists.sourceforge.net/lists/listinfo/pymol-users > or, via email, send a message with subject or body 'help' to > pymol-users-requ...@lists.sourceforge.net > > You can reach the person managing the list at > pymol-users-ad...@lists.sourceforge.net > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of PyMOL-users digest..." > > > Today's Topics: > > 1. Perspective Rendering (at last!) (Warren DeLano) > 2. blinking pictures on sgi4DIRIX646 (Yunfeng Hu) > > --__--__-- > > Message: 1 > From: "Warren DeLano" <war...@delanoscientific.com> > To: <pymol-users@lists.sourceforge.net> > Date: Wed, 24 Nov 2004 11:55:48 -0800 > Subject: [PyMOL] Perspective Rendering (at last!) > > PyMOL Users, > > Hooray -- PyMOL's ray tracer can finally do perspective rendering! Why is > this such a good thing? > > Because (1) ray-traced images are now always "what you see is what you get" > (WYSIWYG) versus OpenGL, (2) you can make rendered movies where molecules > move around still look right, and (3) it will soon become possible to > generate rendered stereo pairs with 'perfect' visual geometry (no more +/- 3 > degree nonsense)... > > However, there is a price to pay: Even though I've beat on the code with > Apple's CHUD performance tool, perspective rendering is still 2-5X slower > than orthoscopic rendering. That's because there are all kinds of > mathematical simplifications one can make in orthoscopic scenes (where all > the rays are parallel) that just don't apply to perspective scenes (where > all the rays aren't parallel). Regardless, even with perspective turned on, > PyMOL's renderer is as fast as PovRay for most basic molecular scenes. > > Updated beta builds for Windows & Mac at: http://delsci.com/beta > http://delsci.com/macbeta > > NOTE: perspective rendering is now the default in order to exactly match > OpenGL geometry. This means that default rendering will seem noticably > slower. If you want faster performance, then turn perspective off using > "set orthoscopic" before rendering. > > Cheers, > Warren > > -- > Warren L. DeLano, Ph.D. > Principal Scientist > > . DeLano Scientific LLC > . 400 Oyster Point Blvd., Suite 213 > . South San Francisco, CA 94080 > . Biz:(650)-872-0942 Tech:(650)-872-0834 > . Fax:(650)-872-0273 Cell:(650)-346-1154 > . mailto:war...@delsci.com > > > > > --__--__-- > > Message: 2 > To: pymol-users@lists.sourceforge.net > From: Yunfeng Hu <yunf...@scripps.edu> > Date: Wed, 24 Nov 2004 15:59:42 -0800 > Subject: [PyMOL] blinking pictures on sgi4DIRIX646 > > Hi, I have pymol 0.97 installed on a sgi workstation. However it keeps > the old picture when I move the molecule, which seems like a long time > delay. I wonder if people have similar experience. > > Eric > > > > > --__--__-- > > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > End of PyMOL-users Digest -- Shiyong Liu ++86 (0)6275 7520 Wellcome to MDL sy...@mdl.ipc.pku.edu.cn http://mdl.ipc.pku.edu.cn/~syliu
