Andreas, It's not a stupid question -- its just a year or more ahead of its time.
Right now "aligment" objects currently don't do anything other than show you which atoms were aligned in the 3D viewer. In time however, those objects will integrate with the sequence-viewer... Cheers, Warren > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Andreas Henschel > Sent: Friday, January 28, 2005 9:18 AM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] Alignment objects > > Dear PyMOL community, > > I am trying to use the align command (from within python) > and want to evaluate the pairwise matches. > the command > > cmd.align(sel1, sel2, object="alignment") > > should do. Sorry for this stupid question, but how do I get > hold of the "alignment" object, and what is its functionality? > Ie which methods/values does it provide? > > Many thanks. > Andreas > > -- > Andreas Henschel > Bioinformatics Group > TU Dresden > Tatzberg 47-51 > 01307 Dresden, Germany > > Phone: +49 351 463 40063 > > > > > ------------------------------------------------------- > This SF.Net email is sponsored by: IntelliVIEW -- Interactive > Reporting Tool for open source databases. Create drag-&-drop > reports. Save time by over 75%! Publish reports on the web. > Export to DOC, XLS, RTF, etc. > Download a FREE copy at http://www.intelliview.com/go/osdn_nl > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
