Gareth, Looking over the code, we're using sscanf for most of the PDB field reads...so there's no way around this short of changing the source code and recompiling. However, are spaces legal within PDB field entries? They would be expected cause problems because space is almost always used to separate tokens.
My suggestion would be to use a Python script to replace those spaces with underscores... Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:war...@delsci.com > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of > Gareth Stockwell > Sent: Friday, April 08, 2005 6:25 AM > To: pymol-users > Subject: [PyMOL] PDB parse error? > > > Warren, > > Using version 0.97, if I load a PDB with an atom like this: > > HETATM 2051 N A HEM B 400 -7.209 4.751 30.974 1.00 > 16.78 N > > (e.g. in PDB 1f1c) > > Then Pymol loads the atom name as 'N' rather than 'N A'. Is > there a way > around this? > > Gareth > > -- > Gareth Stockwell <gar...@ebi.ac.uk> > European Bioinformatics Institute > > > > ------------------------------------------------------- > SF email is sponsored by - The IT Product Guide > Read honest & candid reviews on hundreds of IT Products from > real users. > Discover which products truly live up to the hype. Start reading now. > http://ads.osdn.com/?ad_id=6595&alloc_id=14396&op=click > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
