Hello , I tried to open an r3d (raster3d) file in pymol version 0.98 and I get the following error
Traceback (most recent call last): File "/xtal2/pymol/modules/pymol/__init__.py", line 218, in exec_deferred cmd.load(a,quiet=0) File "/xtal2/pymol/modules/pymol/importing.py", line 549, in load discrete,quiet,multiplex,zoom) File "/xtal2/pymol/modules/pymol/cmd.py", line 755, in _load obj = cgo.from_r3d(finfo) File "/xtal2/pymol/modules/pymol/cgo.py", line 167, in from_r3d if (mode[0:1]=='r') and (string.find(fname,':')>1): NameError: global name 'mode' is not defined The same exact r3d file opens up just fine on pymol 0.97. Is there something I am doing wrong or do I have to do something different to generate the file to work with 0.98. Any help will be greatly appreciated. Also I was curious how to get pymol to spit out the secondary structure assignments it useswhen one says assign sec structure in the gui. I know this was covered before but my googling skills are very dull today. So any help in getting info on the sec str assignments used by pymol for a particular model will also be greatly appreciated. Thanks hari
