Hi Vanessa,
(1) Are there commands that I can type such that I can
shift the coordinate for the entire PDB file without
using the mouse?
Try:
alter_state 1,selection,(x,y,z)=(newx,newy,newz)
(2) If the mouse is the only way I can shift
coordinates, then how do I use the mouse so that I can
change the X-coordinate?
Alternatively you can use the mouse in editing mode
(3) What does the origin command do?
origin sets the origin used in the pymol viewer to the
centre of geometry of the selection (or of everything if
no selection is given, or to a specified point). It does
not change coordinates.
Thanks,
Vanessa
Your welcome :) (Hope it helps)
Cheers,
Tsjerk
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