Some further explanation on how presets work:
The presets usually set a number of object-specific settings, such as
stick_color.
In the case of the ball & stick preset, stick_color is set to white for
the selected objects, and the radius is set to 0.14. To change that,
you'll need to change the setting for those objects:
# load some object
fragment arg, my_object
# call the present function
preset.ball_and_stick("my_object")
# to query
get stick_color, my_object
get stick_radius, my_object
# to set
set stick_color, grey, my_object
set stick_radius, 0.2, my_object
# to restore the object to using the global defaults
unset stick_color, my_object
unset stick_radius, my_object
Cheers,
Warren
--
Warren L. DeLano, Ph.D.
Principal Scientist
. DeLano Scientific LLC
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. South San Francisco, CA 94080 USA
. Biz:(650)-872-0942 Tech:(650)-872-0834
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> -----Original Message-----
> From: [email protected]
> [mailto:[email protected]] On Behalf Of
> Tsjerk Wassenaar
> Sent: Friday, July 15, 2005 10:24 PM
> To: Gosu Ramachandriah
> Cc: [email protected]
> Subject: Re: [PyMOL] changing stick color
>
> Hi Gosu,
>
> You can try:
>
> set stick_color, some_color
>
> It is also possible the reduce the sphere radius by using:
>
> set sphere_scale, 0.15
>
> If you then hav two objects of your ligand, you can show one
> with spheres and the other as sticks, and you'll have maximal
> control of your scene with regards to colouring.
>
> Hope it helps,
>
> Tsjerk
>
>
> On 7/12/05, Gosu Ramachandriah <[email protected]> wrote:
> > Hi,
> > I am using pymol ver 0.98. I want to display ligand binding
> site, with
> > metal atom as sphere and other residues as sticks. To do this , I
> > selected ball-and-stick from "preset" menu, subsequently
> switched off
> > spheres for residues. But stick color is not able to be
> replaced. How
> > can I change stick color? Or is it possible to reduce the sphere
> > radius?
> >
> > Thanks
> > Gosu
> >
> >
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