Sebastien,
Yes, you can do with with a "p1m" file, which is like a "pml" file, but data can be
included as well. Also note that p1m files are intended for web publishing, so embedded Python is
disallowed. In p1m files, there is an "embed" command that enables this for PDB, MOL, MOL2, SDF,
and XPLOR data. It works like this:
embed tag, format
****REPLACE THIS LINE WITH YOUR DATA FILE****
embed end
load_embedded tag
where tag is some identifier of your choice.
Cheers,
Warren
Warren,
It is the format I sought for. E.g.:
embed 1H1S, pdb
HEADER TRANSFERASE 21-JUL-02 1H1S
TITLE STRUCTURE OF HUMAN THR160-PHOSPHO CDK2/CYCLIN A COMPLEXED
...
CONECT 9002 9000
MASTER 531 0 4 64 20 0 8 6 9701 4 82 88
END
embed end
load_embedded 1H1S
...
I load structure and PyMOL instructions in one file.
Thanks
Hello,
Is there a way to get one file with pymol commands (pml
script) and with the structure (PDB file) ?
I can get this with Rasmol and the ras script file.
Can I get the same kind of file with PyMOL ?
Thanks
--
Sébastien Moretti
http://www.igs.cnrs-mrs.fr/
CNRS - IGS
31 chemin Joseph Aiguier
13402 Marseille cedex
