> > I was wondering if it is possible to save a carved out section of a > > map and the read it back into pymol as a separate map.
> Pymol won't do it Not so, as of today (grin). In 0.99beta11 and beyond, the newly implemented command to carry this out is "map_trim". (Windows build at http://delsci.com/beta or compile from source). map_trim map-name, selection-name, buffer Combined with the convenient new object-name wildcards (!!!), you could for example trim all your maps to 3 Angstroms around ligands with one commmand as follows map_trim *, organic, 3 With map size now reduced, the map_double command can come in handy to increase mesh density on your figure. map_double * Also in this new beta: Dunbrack rotamers, nucleic acid cartoons, new pop-up menus, etc. Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:war...@delsci.com > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of Tim Fenn > Sent: Saturday, August 13, 2005 11:38 AM > To: Schubert, Carsten [PRDUS] > Cc: pymol-users@lists.sourceforge.net > Subject: Re: [PyMOL] Saving a carved section of a map. > > On Fri, Aug 12, 2005 at 02:48:16PM -0400, Schubert, Carsten > [PRDUS] wrote: > > > > I was wondering if it is possible to save a carved out section of a > > map and the read it back into pymol as a separate map. > > Pymol won't do it, but if its something thats urgent, > povscript+ saves maps in GTS format (including vertex colors): > > http://gts.sf.net > http://www.stanford.edu/~fenn/povscript/gts_fileformat.html > > HTH, > Tim > > -- > --------------------------------------------------------- > > Tim Fenn > f...@stanford.edu > Stanford University, School of Medicine > James H. Clark Center > 318 Campus Drive, Room E300 > Stanford, CA 94305-5432 > Phone: (650) 736-1714 > FAX: (650) 736-1961 > > --------------------------------------------------------- > > > > ------------------------------------------------------- > SF.Net email is Sponsored by the Better Software Conference & > EXPO September 19-22, 2005 * San Francisco, CA * Development > Lifecycle Practices Agile & Plan-Driven Development * > Managing Projects & Teams * Testing & QA Security * Process > Improvement & Measurement * http://www.sqe.com/bsce5sf > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > >
