check this link! http://www.csb.yale.edu/userguides/graphics/pymol/electro.html
Hope it wud help. best sn --- pymol-users-requ...@lists.sourceforge.net wrote: > Send PyMOL-users mailing list submissions to > pymol-users@lists.sourceforge.net > > To subscribe or unsubscribe via the World Wide Web, > visit > > https://lists.sourceforge.net/lists/listinfo/pymol-users > or, via email, send a message with subject or body > 'help' to > pymol-users-requ...@lists.sourceforge.net > > You can reach the person managing the list at > pymol-users-ad...@lists.sourceforge.net > > When replying, please edit your Subject line so it > is more specific > than "Re: Contents of PyMOL-users digest..." > > > Today's Topics: > > 1. Displaying an electrostatic potential on msms > (Anna Feldman-Salit) > 2. Re: Displaying an electrostatic potential on > msms (Peter Adrian Meyer) > > --__--__-- > > Message: 1 > Date: Mon, 12 Sep 2005 11:25:39 +0200 > From: Anna Feldman-Salit > <anna.feldman-sa...@eml-r.villa-bosch.de> > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] Displaying an electrostatic > potential on msms > > Dear All, > > I have a 0.98 PyMol version with APBS and > Iso_Sliders plugins. However, > my aim is not just visualize isosurfaces of > electrostatic potential at > certain values, but to display/map it on molecular > surface. > > Would you be so kind to share your knowledge with me > on this subject? > > I'd appreciate any help or advice of yours! > > Thanks, > > Anna. > > > --__--__-- > > Message: 2 > Date: Mon, 12 Sep 2005 12:03:54 -0400 (EDT) > Subject: Re: [PyMOL] Displaying an electrostatic > potential on msms > From: "Peter Adrian Meyer" <pa...@cornell.edu> > To: "Anna Feldman-Salit" > <anna.feldman-sa...@eml-r.villa-bosch.de> > Cc: pymol-users@lists.sourceforge.net > > Hi Anna, > I generally run apbs seperately (due to difficulties > with Alphas), but use > the plugin to display with pymol. apbs will > produce two output files, > acc.dx and pot.dx. acc.dx is the electrostatic > potential mapped to the > solvent accessible surface; pot.dx is the > electrostatic potential over the > grid. What I generally do is to load acc.dx into > pymol, and they use the > plugin->apbs->display to show the surface (not sure > of the exact sequence; > pymol's doing a ray-tracing job for me at the moment > so I can't check). > > Hope this helps...I've never tried the iso_sliders > plugin. I believe the > author of the apbs plugin is on this list, and will > probably give you > clearer answers. > > Pete > > > Dear All, > > > > I have a 0.98 PyMol version with APBS and > Iso_Sliders plugins. However, > my aim is not just visualize isosurfaces of > electrostatic potential at > certain values, but to display/map it on molecular > surface. > > > > Would you be so kind to share your knowledge with > me on this subject? > > > > I'd appreciate any help or advice of yours! > > > > Thanks, > > > > Anna. > > > > > > > ------------------------------------------------------- > > SF.Net email is Sponsored by the Better Software > Conference & EXPO > September 19-22, 2005 * San Francisco, CA * > Development Lifecycle > Practices > > Agile & Plan-Driven Development * Managing > Projects & Teams * Testing & > QA > > Security * Process Improvement & Measurement * > http://www.sqe.com/bsce5sf > > _______________________________________________ > > PyMOL-users mailing list > > PyMOL-users@lists.sourceforge.net > > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > > > Pete Meyer > Fu Lab > BMCB grad student > Cornell University > > > > > > > > --__--__-- > > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > End of PyMOL-users Digest > __________________________________________________ Do You Yahoo!? Tired of spam? Yahoo! Mail has the best spam protection around http://mail.yahoo.com
