Hi,
I'm trying to write a script to load a series of model peptides and
superimpose them to a template structure.
The part that actually loads the models and superimpose them looks like
this:
for i in range(1,100):
model = 'model.pdb.' + str(i)
cmd.load(model)
cmd.hide("everything", model)
cmd.show("ribbon" , model)
cmd.pair_fit ("/model///30-35/CA", "/template///289-294/CA")
The models are properly loaded (from model.pdb.1 to model.pdb.100) and
displayed; i.e. the variable 'model' is being understood by pymol. But
it seems that it is not recognized by the selection in the pair_fit
command. I get the following error message:
Selector-Error: Misplaced ).
Selector-Error: Malformed selection.
( ( model ) <--
ExecutiveRMS-Error: Atom counts between selection sets don't match (0 != 6).
... which seems a pretty straightforward error message. I've tried
different 'alternative syntaxes', but I can't get the correct form.
Any help?
Thanks in advance
xavi
--
Xavier Deupi, Ph.D.
Department of Molecular and Cellular Physiology
Beckman Center for Molecular and Genetic Medicine (B161)
279 Campus Drive, Stanford University School of Medicine
Stanford, CA 94305 (USA)
E-mail: xavier.de...@stanford.edu
Phone: +1 (650) 725-6497
Fax : +1 (650) 725-8021
