> is there any possibility to get a list of the pairs of atoms 
> that are matched using the align command?

Not yet...sorry.  Alignment objects are coming, but post 1.0.

--
Warren L. DeLano, Ph.D.                     
Principal Scientist

. DeLano Scientific LLC  
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> -----Original Message-----
> From: pymol-users-ad...@lists.sourceforge.net 
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of 
> Marc Bruning
> Sent: Tuesday, September 20, 2005 6:42 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] alignment question
> 
> hello,
> 
> is there any possibility to get a list of the pairs of atoms 
> that are matched using the align command?
> 
> cheers,
> marc
> 
> 
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