Well ill be d......! The .pse file you send me shows the loops just
fine. I´m still puzzled as to why PyMol 0.98 on win2000 fails to show
those loops but now I can just use your .pse file as a template and work
my way around it. Ill also try upgrading as Warren suggest. Anyways,
thanks a lot for the help, it is greatly appreciated!
Cheers
kasper
<-----Original Message----->
From: Joel Tyndall
Sent: 10/18/2005 10:17:30 PM
To: [email protected]
Subject: Re: [PyMOL] Missing parts in cartoon mode
Hi again,
Hmmm had a look and it looks fine to me. I'm assuming you're looking at
chain H. See if you can open this pse file which is displaying the
cartoon. The only strange thing is that there is no residue 218. sorry I
can't be of any more help. might be worth sending Warren/me a pse of the
problem?
See ya
J
PS thats a windows pse file and should work
[email protected] wrote:
> Hi Joel
> The two missing loops of the 1DAN structure when in cartoon mode are
> located to res. 183-189 and 220-220. I´m using a standard PC with
> Windows 2000.
> Any suggestions? A fellow collegue in my lab is having identical
> troubles but he´s also using a PC with win2000. Its quite frustrating
> because the rest of the structure looks great in PyMol!
>
> Cheers Kasper
> The two missing loops of the 1DAN structure when in cartoon mode are
> located to res. 183-189 and 220-220. I´m using a standard PC with
> Windows 2000.
> Any suggestions? A fellow collegue in my lab is having identical
> troubles but he´s also using a PC with win2000. Its quite frustrating
> because the rest of the structure looks great in PyMol!
>
> Cheers Kasper
>
>
> <-----Original Message----->
> *From: Joel Tyndall*
> Sent: 10/17/2005 12:07:00 AM
> To: [email protected]
> Subject: Re: [PyMOL] Missing parts in cartoon mode
>
> Hey Kasper,
>
> which loops can't you see (amino acid nos./chain/)? what OS are you on
> (OSX, PC, Linux?) I have had a look and it looks ok on windows
>
> Cheers
>
> J
>
> [email protected] wrote:
>
> > Hi everybody
> > I am getting quite desperate! For some strange reason PyMol do not
> > display certain areas (several loops) of my .pdb file (1DAN) when in
> > cartoon display mode. When I display the structure in "lines" or
> > "sticks" everything is ok. Other pdb-viewers dont have this problem
> > with the same .pdb file. I have tried several things:
> > 1. Upgraded to the newest version og PyMol.
> > 2. Redefined secondary structure using the "alter" command.
> > 3. Imported the .pdb file into SwissViewer, saved as the imported
> > structure as a .pdb file, and then imported into PyMOl.
> >
> > None of these things have solved the problem. Help please! (I would
> > hate to have to start using another pdb-viewer!!) Cheers Kasper
> >
> > _______________________________________________________________
> > ICQ - You get the message, anywhere!
> > Get it @ http://www.icq.com
> >
> >
> >
>
> --
> Joel Tyndall, PhD
>
> Lecturer
> National School of Pharmacy
> University of Otago
> PO Box 913 Dunedin
> NNew Zealand
>
> Pukenga
> Te Kura Taiwhanga Putaiao
> Te Whare Wananga o Otago
> Pouaka Poutapeta 913 Otepoti
> Aotearoa
>
> Ph / Waea +64 3 4797293
> Fax / Waeawhakaahua +64 3 4797034
>
>
> .
>
> _______________________________________________________________
> ICQ - You get the message, anywhere!
> Get it @ http://www.icq.com
>
>
>
--
Joel Tyndall, PhD
Lecturer
National School of Pharmacy
University of Otago
PO Box 913 Dunedin
New Zealand
Pukenga
Te Kura Taiwhanga Putaiao
Te Whare Wananga o Otago
Pouaka Poutapeta 913 Otepoti
Aotearoa
Ph / Waea +64 3 4797293
Fax / Waeawhakaahua +64 3 4797034
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