Yes, in recent builds (http://delsci.com/beta).

set opaque_background, off

then

draw or ray

and then save the image.

NOTE: Some graphics cards support this in OpenGL (draw command), other systems 
can only do transparent backgrounds via the ray-tracer (ray command).

Cheers,
Warren

--
Warren L. DeLano, Ph.D.                     
Principal Scientist

. DeLano Scientific LLC  
. 400 Oyster Point Blvd., Suite 213           
. South San Francisco, CA 94080 USA   
. Biz:(650)-872-0942  Tech:(650)-872-0834     
. Fax:(650)-872-0273  Cell:(650)-346-1154
. mailto:war...@delsci.com      
 

> -----Original Message-----
> From: pymol-users-ad...@lists.sourceforge.net 
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of 
> Kerff Frédéric
> Sent: Thursday, November 17, 2005 5:16 AM
> To: PyMOL-users@lists.sourceforge.net
> Subject: [PyMOL] Transparent background
> 
> Hi pymol users,
> 
> I'd like to make a figure with a transparent background. Is 
> it possible with pymol?
> Thanks for your help.
> 
> Fred
> 
> 
> 
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