Vanessa, You're missing commas, and you need to issue the command in the model frame of reference (camera frame of reference is the default):
translate [-14.911, -23.457, -1.534], camera=0 \ Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:[email protected] > -----Original Message----- > From: [email protected] > [mailto:[email protected]] On Behalf Of > Vanessa Oklejas > Sent: Wednesday, December 14, 2005 4:36 PM > To: [email protected] > Subject: [PyMOL] translating and rotating protein in space > > Hi all, > > I would like to translate and rotate a protein in pymol such > that the pdb coordinates place the center at a specific atom > in the pdb structure. For example, if the atom of interest > has the coordinates > [14.911 23.457 1.534], then I would the pdb coordinates to be [0 0 0]. > > I've tried to use the "translate" keyword from the command line: > > >> translate [-14.911 -23.457 -1.534] > > However I get the following error message: > Traceback (most recent call last): > File "C:\Program Files\DeLano > Scientific\PyMOL/modules\pymol\parser.py", line 188, in parse > result=apply(kw[nest][0],args[nest],kw_args[nest]) > File "C:\Program Files\DeLano > Scientific\PyMOL/modules\pymol\editing.py", line 1126, in translate > vector = [float(vector[0]),float(vector[1]),float(vector[2])] > > > > > Any help out there? > > Muchos Gracias, > Vanessa > > > > ------------------------------------------------------- > This SF.net email is sponsored by: Splunk Inc. Do you grep > through log files for problems? Stop! Download the new AJAX > search engine that makes searching your log files as easy as > surfing the web. DOWNLOAD SPLUNK! > http://ads.osdn.com/?ad_id=7637&alloc_id=16865&op=click > _______________________________________________ > PyMOL-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > >
