Warren-
I never even noticed the -l option. That's awesome!
Thanks,
-michael
--
www.umich.edu/~mlerner | _ |Michael Lerner
This isn't a democracy;| ASCII ribbon campaign ( ) | Michigan
it's a cheer-ocracy. | - against HTML email X | Biophysics
-Torrence, Bring It On| / \ | mler...@umich
On Fri, 6 Jan 2006, Warren DeLano wrote:
NOTE: Bug fix for receive.py
# BEGIN receive.py
from pymol import cmd
from time import sleep
import os
filename = "view.txt"
while not sleep(0.2):
if os.path.exists(filename):
try:
cmd.set_view(eval(open(filename,'r').read()))
os.unlink(filename)
except: # if the file isn't yet complete
pass
# END receive.py
Cheers,
Warren
--
Warren L. DeLano, Ph.D.
Principal Scientist
. DeLano Scientific LLC
. 400 Oyster Point Blvd., Suite 213
. South San Francisco, CA 94080 USA
. Biz:(650)-872-0942 Tech:(650)-872-0834
. Fax:(650)-872-0273 Cell:(650)-346-1154
. mailto:war...@delsci.com
-----Original Message-----
From: Warren DeLano
Sent: Friday, January 06, 2006 2:54 PM
To: 'Michael George Lerner'; pymol-users@lists.sourceforge.net
Subject: RE: [PyMOL] Can I use the mouse to control multiple windows?
Michael,
Of course -- use ansynchrous Python threads to automate the
process. For example:
pymol test.pdb -l send.py &
pymol test.pdb -l receive.py
with the scripts below. Note use of the lowercase "L" option
to launch PyMOL Python scripts in their own asynchronous thread.
Cheers,
Warren
# BEGIN send.py
from pymol import cmd
from time import sleep
import os
last_view = cmd.get_view()
filename = "view.txt"
while not sleep(0.2):
cur_view = cmd.get_view()
if last_view != cur_view:
if not os.path.exists(filename):
open(filename,'w').write(str(cur_view))
last_view = cur_view
# END send.py
# BEGIN receive.py
from pymol import cmd
from time import sleep
import os
filename = "view.txt"
while not sleep(0.2):
if os.path.exists(filename):
try:
cmd.set_view(eval(open(filename,'r').read()))
os.unlink(filename)
except: # if the file isn't yet complete
pass
# END receive.py
Cheers,
Warren
--
Warren L. DeLano, Ph.D.
Principal Scientist
. DeLano Scientific LLC
. 400 Oyster Point Blvd., Suite 213
. South San Francisco, CA 94080 USA
. Biz:(650)-872-0942 Tech:(650)-872-0834
. Fax:(650)-872-0273 Cell:(650)-346-1154
. mailto:war...@delsci.com
-----Original Message-----
From: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf
Of Michael
George Lerner
Sent: Friday, January 06, 2006 1:56 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Can I use the mouse to control multiple windows?
Longshot, but ..
I'm looking at a structure under two different sets of
conditions, so
I have two PyMOL windows open. I'm constantly get_view and
set_view[*] to synchronize the two windows. Is there some
way to set
things up so that I can drag things around in one window
and have the
scene in the other window automatically follow along?
Thanks,
-michael
[*] actually, I'm a bit lazier than that .. I now have this
run via my
.pymolrc:
VIEW_FILENAME = '/tmp/currentview.txt'
def gv():
'''write current view to a file (default
/tmp/currentview.txt)'''
# '...%s...'%VIEW_FILENAME doesn't end up as gv.__doc__
f = file(VIEW_FILENAME,'w')
f.write(str(cmd.get_view()))
f.close()
def sv():
'''read current view from a file (default
/tmp/currentview.txt)'''
# '...%s...'%VIEW_FILENAME doesn't end up as sv.__doc__
f = file(VIEW_FILENAME)
cmd.set_view(f.read())
f.close()
cmd.extend('gv',gv)
cmd.extend('sv',sv)
so I can type 'gv' in one window and 'sv' in the other.
--
www.umich.edu/~mlerner | _ |Michael Lerner
This isn't a democracy;| ASCII ribbon campaign ( ) | Michigan
it's a cheer-ocracy. | - against HTML email X | Biophysics
-Torrence, Bring It On| / \ | mler...@umich
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