Hi, Le Mercredi 11 Janvier 2006 17:27, Charlotte Habegger-Polomat a écrit : > Hello Pymol users! > > As a fairly unexperienced user of Pymol, I have not yet found a way to > select all residues in one of the cavities in my protein of interest. > When I render the protein as a surface, I can't select and visualize the > individual residues in the cleft.
You can use the clipping planes when you want to explore the core of your protein (shift+right-button, move mouse up/down). Another way is to select your ligand inside your cavity, then select around (menu A -> around -> 6 A for your ligand selection) and then select S-> surface. > When not rendered as a surface, I > can't seem to select only residues on the surface and not those buried > inside. > > Is there a straightforward way to do this (select and visualize the > residues on the (outside) surface of a cavity, with their labels)? I publish today a pre-release of a PyMOL tutorial in french : http://www.pansanel.net/chemistry/resources/PymolIntroduction.pdf You can take a look ! Jerome Pansanel > Thanks! > > -Charlotte > > > > > ------------------------------------------------------- > This SF.net email is sponsored by: Splunk Inc. Do you grep through log > files for problems? Stop! Download the new AJAX search engine that makes > searching your log files as easy as surfing the web. DOWNLOAD SPLUNK! > http://ads.osdn.com/?ad_id=7637&alloc_id=16865&op=click > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users
