Stephen, set ray_interior_color, color-name ray
or set ray_interior_color, -5 ray to get an an effect like in that figure where the interiors are different colors (on a per-object basis, or simply recolor afterwards in Photoshop). Note that the entire interior needs to be within the clip slab in order for this to work. Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:[email protected] > -----Original Message----- > From: [email protected] > [mailto:[email protected]] On Behalf Of > Stephen Graham > Sent: Friday, January 27, 2006 5:32 AM > To: [email protected] > Subject: [PyMOL] Cutaway surface > > Hi all, > > Is there any way good way in pymol of displaying a slice > through a surface and block colouring the 'inner' face of the > surface. > Basically, I would like to generate a figure that looks like > part (b) of > http://www.nature.com/nature/journal/v432/n7014/fig_tab/nature > 02988_F3.html > using pymol. I have tried playing with the lighting models > and backpace culling (a-la set ambient=0; set direct=0.7; set > reflect=0.0; set backface_cull=0) but they are not quite what > I am after. > > Can anyone recommend a good way to achieve this effect? > > Thanks, > > Stephen > > -- > Stephen Graham > Crystallography Group > School of Molecular and Microbial Biosciences University of Sydney > > > ------------------------------------------------------- > This SF.net email is sponsored by: Splunk Inc. Do you grep > through log files for problems? Stop! Download the new AJAX > search engine that makes searching your log files as easy as > surfing the web. DOWNLOAD SPLUNK! > http://sel.as-us.falkag.net/sel?cmd=k&kid3432&bid#0486&dat1642 > _______________________________________________ > PyMOL-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > >
