I recently switched to MacPyMol 0.99. I frequently open a pdbfile using the command line in OsX using the "open" command. This opens up the pdbfile in macpymol. The problem is that the present working directory is not set up properly.
For instance: % cd pdbfiles % open test.pdb PyMol > pwd I get "/" as the path if I open the pdb in the following way: % cd pdbfiles % /Applications/MacPyMOL.app/Contents/MacOS/MacPyMOL test.pdb PyMol > pwd I get "/Users/andrew/pdbfiles" as the path. Does anyone know how to get around this problem? Incidently I have the same issue when clicking on pdbfiles using the finder. Andrew Wollacott, PhD Baker Research Lab University of Washington
