Hi Michael,

simply load both molecules in the same frame, and change to Mouse/3 Button Editing Mode. You have to select the molecule you want to translate/rotate by left clicking on an atom of it.
Now, you have following options:
shift+LMB+mouse_movement := rotate this molecule around the selected atom

shift+MMB+mouse_movement := translate in x and y directions

shift+RMB+mouse_movement := translate in z direction.

Just play around with these combinations...
Greetz

Yusuf

Quoting Michael Weber <web...@staff.uni-marburg.de>:

Hello,
how is it possible to independently rotate or translate two molecules in pyMOL? I would like to display the interaction of two macromolecules but to do so, I first have to adjust their position relative to each other. Do I have to use different frames for loading, then positioning each in the desired way and finally display as "all states" or is there a more convenient way to achieve this apparently simple task that I have obviously overlooked?

Thanks a lot for your help,
Michael.




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