Hello List, I would like to have any help.
I want to build several 3-peptides, like AAA, FFF, KKK etc. I also would like to make them zwitterionics, add chain and save as a PDB file. I know how to do that using the graphic interface, but I what I am looking for is a way to do it via pymol script. Is is possible? May anyone give a idea of how create the 3-peptides and put right N- and C- terminals? BTW, a loop with "for" is possible in pymol scripting? Summarising, I am trying a script like this: ----------------------- residue = ( ALA, ARG, etc) for res in residue: 'create peptide res-res-res' 'set NH3 in res 1 and COO- in res 3' save aa.pdb, all ----------------------- Thanks a lot for any help. Cheers, Alan -- Alan Wilter S. da Silva, D.Sc. - Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK.
