Laurence, > Does it do all drawing objects or just surfaces ?
All objects except labels. However, triangle normals aren't current exported, which means that surfaces and cartoons don't look nearly as good...I'm not sure if this is something that can be added in VRML2 or not. > and will it be in MacPyMol ? Yes, with the next release. Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:war...@delsci.com > -----Original Message----- > From: Laurence Pearl [mailto:laurence.pe...@icr.ac.uk] > Sent: Friday, March 17, 2006 5:03 AM > To: Warren DeLano; h...@genome.stanford.edu > Cc: pymol-users@lists.sourceforge.net > Subject: RE: : [PyMOL] Surface Vertex Coordinates > > Does it do all drawing objects or just surfaces ? > > and will it be in MacPyMol ? > > > Laurence > > -------------------------------------------------------------- > ------------------ > Laurence H. Pearl > Section of Structural Biology, Institute of Cancer Research > Chester Beatty Laboratories, 237 Fulham Road, London SW3 6JB, > UK Phone +44-(0)20 7153 5422 : Secretary +44-(0)20 7153 5443 : FAX > +44-(0)20 7153 5457 > -------------------------------------------------------------- > ------------------ > "Live Simply and do Serious Things .. " > - Dorothy Crowfoot Hodgkin > -------------------------------------------------------------- > ------------------ > >>> "Warren DeLano" <war...@delsci.com> 03/17/06 6:56 AM >>> > > Of course it would be a whole lot easier if PyMol output VRML > > directly > > ..... Warren ????? > > Chris Want's latest VRML2 code is now in CVS (with a few > minor tweaks of my own...) > > save my_vrml.wrl > > Cheers, > Warren > > -- > Warren L. DeLano, Ph.D. > Principal Scientist > > . DeLano Scientific LLC > . 400 Oyster Point Blvd., Suite 213 > . South San Francisco, CA 94080 USA > . Biz:(650)-872-0942 Tech:(650)-872-0834 > . Fax:(650)-872-0273 Cell:(650)-346-1154 > . mailto:war...@delsci.com > > > > -----Original Message----- > > From: pymol-users-ad...@lists.sourceforge.net > > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf > Of Laurence > > Pearl > > Sent: Wednesday, March 15, 2006 9:35 AM > > To: Benjamin Hitz > > Cc: pymol-users@lists.sourceforge.net > > Subject: Re: : [PyMOL] Surface Vertex Coordinates > > > > The Povray intermediate file generated when you do 'ray > renderer = 1' > > contains all vertices, normals and colouring information > for cartoon > > and surface object types. However you do need to produce a parsing > > script to extract these in to a useful form for importing > into other > > programs. Have a look at the front cover of Mol Cell vol 20(4) - I > > generated a cartoon of the protein in PyMol, output it as a povray > > file, and then converted it to VRML using a jiffy produced by Chris > > Richardson, and then used it as an object in the Blender 3D > > modelling > > package to generate the picture. > > > > Of course it would be a whole lot easier if PyMol output VRML > > directly > > ..... Warren ????? > > > > Laurence Pearl > > > > > > On 15 Mar 2006, at 17:01, Benjamin Hitz wrote: > > > > >> > > >> I am interested in the coordinates of the vertices of the mesh > > >> representation of the molecular surface. Is there any > > method to read > > >> them out? > > >> > > >> Thanks > > >> > > > > > > Me too. With coloring and/or other "property" > information as well. > > > > > > > > > > > > -- > > > Ben Hitz > > > Senior Scientific Programmer ** Saccharomyces Genome > Database ** GO > > > Consortium Stanford University ** h...@genome.stanford.edu > > > > > > > > > > > > > > > > > > ------------------------------------------------------- > > > This SF.Net email is sponsored by xPML, a groundbreaking > scripting > > > language that extends applications into web and mobile > > media. Attend > > > the live webcast and join the prime developer group > > breaking into this > > > new coding territory! > > > http://sel.as-us.falkag.net/sel? > > > cmd=lnk&kid=110944&bid=241720&dat=121642 > > > _______________________________________________ > > > PyMOL-users mailing list > > > PyMOL-users@lists.sourceforge.net > > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > > > -------------------------------------------------------------- > > ---------- > > -- > > Laurence H. Pearl > > > > Section of Structural Biology, Institute of Cancer Research > > Chester Beatty Laboratories, 237 Fulham Road, London SW3 6JB, UK > > > > Phone +44-(0)20 7153 5422 : Secretary +44-(0)20 7153 5443 > > FAX +44-(0)20 7153 5457 : E-Mail laurence.pe...@icr.ac.uk > > -------------------------------------------------------------- > > ---------- > > -- > > " Live Simply and do Serious Things .. " - Dorothy > Crowfoot Hodgkin > > -------------------------------------------------------------- > > ---------- > > -- > > > > > > > > ------------------------------------------------------- > > This SF.Net email is sponsored by xPML, a groundbreaking scripting > > language that extends applications into web and mobile > media. Attend > > the live webcast and join the prime developer group > breaking into this > > new coding territory! > > http://sel.as-us.falkag.net/sel?cmd=lnk&kid=110944&bid=241720&; > > dat=121642 > > _______________________________________________ > > PyMOL-users mailing list > > PyMOL-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > > > > > > > > > > >
