Chad, You can try,
show spheres, resn HOH (or whatever your waters are called) set sphere_scale, .2 set sphere_transparency, .5 Good luck, -bob On 3/20/06, Chad R. Simmons <cr...@cornell.edu> wrote: > Hello, > > I am using "nb_spheres" to represent waters in a figure I am generating but > cannot figure out how to make them transparent (i.e. set > sphere_transparency=x only works for traditional spheres). Any help would > be greatly appreciated. > > Thanks. > > Chad > ********************************************** > Chad R. Simmons > Cornell University > Division of Nutritional Sciences > 235 Kinzelberg Hall > Ithaca, NY 14853 > > Email: cr...@cornell.edu > Phone: (607)255-2685 > Fax: (607)255-1033 > > > > ------------------------------------------------------- > This SF.Net email is sponsored by xPML, a groundbreaking scripting language > that extends applications into web and mobile media. Attend the live webcast > and join the prime developer group breaking into this new coding territory! > http://sel.as-us.falkag.net/sel?cmd=lnk&kid=110944&bid=241720&dat=121642 > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users >
