Alan, > Is PyMol able to save the built protein/molecule in a PDB > file with CONECT information. If so, how to do it?
Yes, set pdb_conect_all before saving the pdb file in order to get a PDB file with explicit connectivity and valences for all atoms. Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:war...@delsci.com > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of Alan > Sent: Monday, March 20, 2006 11:39 AM > To: Pymol > Subject: [PyMOL] Saving PDB with CONECT information > > Hello List! > > Is PyMol able to save the built protein/molecule in a PDB > file with CONECT information. If so, how to do it? > > Thanks in advance for any help. > > Cheers, > Alan > -- > Alan Wilter S. da Silva, D.Sc. - Research Associate > Department of Biochemistry, University of Cambridge. > 80 Tennis Court Road, Cambridge CB2 1GA, UK. > > > ------------------------------------------------------- > This SF.Net email is sponsored by xPML, a groundbreaking > scripting language that extends applications into web and > mobile media. Attend the live webcast and join the prime > developer group breaking into this new coding territory! > http://sel.as-us.falkag.net/sel?cmd=k&kid0944&bid$1720&dat1642 > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > >
