I think that the create command will do this

create newM, select statement

if I have a molecule named mol1 with three chains and I  want to make
a copy of chain c I would use

create new_C, mol1 & c. C

Andrew



On 3/28/06, Michael Weber <web...@staff.uni-marburg.de> wrote:
>
> Hello,
> is there a possibility in PyMOL to duplicate a molecule that is present in
> the currently loaded PyMOL session file such that is exactly placed on its
> "parent"? I have to color the same residue in two or more colors.
> I ask this because reloading the same molecule requires subsequent alignment
> and - strangely - these alignments are often not performed properly (my
> files contain many other molecules as well) although the same molecule is
> already present.
>
> Thanks for your help,
>
> Michael.

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