There are two ways to do this. Either start pymol from the command line
in your working directory, or use .pymolrc to automatically change to this
directory (something like os.chdir('~/working_directory') should do it).
Pete
> Would it be possible to add setting to pymol for a default working
directory?
> Along with this, perhaps a setting that, by default, ignores hidden
directories? As it now stands, whenever I fire up pymol on linux, I
have
> to
> navigate down a huge list of hidden directories to find the directory, then
> the subdirectory, within which my pdbs and pses reside. Pymol doesn't
remember this so every time I start it, it is the same thing all over
again.
>
Pete Meyer
Fu Lab
BMCB grad student
Cornell University
