Alan, The only sure way to get this to work is to build into a local Python interpreter from PyMOL source code using distutils. Otherwise, you're likely better off with "pymol -qc"
Cheers, Warren -- Warren L. DeLano, Ph.D. Principal Scientist . DeLano Scientific LLC . 400 Oyster Point Blvd., Suite 213 . South San Francisco, CA 94080 USA . Biz:(650)-872-0942 Tech:(650)-872-0834 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:war...@delsci.com > -----Original Message----- > From: pymol-users-ad...@lists.sourceforge.net > [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of Alan > Sent: Thursday, April 20, 2006 5:37 AM > To: Pymol > Subject: [PyMOL] importing pymol modules in a python script > > Hello List! > > I want a python script likewise: > > #!/usr/bin/python -O > import sys, tempfile > from pymol import editor > from pymol import cmd > .... > .... > > However, even defining 'export PYTHONPATH=/usr/local/pymol/modules' > > I got this error: > from pymol import editor > File "/usr/local/pymol/modules/pymol/__init__.py", line 353, in ? > import _cmd > ImportError: No module named _cmd > > Is there a way to run the python script with pymol stuff > imported or only via 'pymol -c'? > > Many thanks in advance. > Alan > -- > Alan Wilter S. da Silva, D.Sc. - Research Associate > Department of Biochemistry, University of Cambridge. > 80 Tennis Court Road, Cambridge CB2 1GA, UK. > > > ------------------------------------------------------- > Using Tomcat but need to do more? Need to support web > services, security? > Get stuff done quickly with pre-integrated technology to make > your job easier Download IBM WebSphere Application Server > v.1.0.1 based on Apache Geronimo > http://sel.as-us.falkag.net/sel?cmd=k&kid0709&bid&3057&dat1642 > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > > >
