Hi everybody, I'm working on multiple sequence alignments and I'm looking for co-evolving residues (positions/columns in the alignment). I performed a statistical analysis (clustering) and obtain a tree in which leaves are positions. I use a tree viewer (written in tcl/tk) to manipulate the tree, and i'd like to link this tree viewer to PyMOL in order to be able to select residues or cluster of residues in the tree and color them in the pdb structure displayed in Pymol. In the PyMOL user manual, it's said that to link PyMOL with an other program, we have to use a separate external GUI window to control the interaction, rather than changing internal PyMOL code. Is someone could tell me more about this idea? how can this work ? Thanks in advance!
pierre.
