I have two tasks that I have yet to work out in PyMol. 1) I would like to generate a custom isovalue map. I see that the Isomesh command likely provides what I need, but it requires a "map" object. I can't seem to find any explanation of what a map object is or how I might create one for a custom isovalue map.
2) Clipping planes appear to affect all objects in a view. I often want to display a protein's surface, show a few residues of interest, and show a docked/co-crystal ligand. Is it possible to clip through only the surface and leave the ligand and protein residues intact? Or, more generally, attach and detach clipping planes to specific display objects. Thanks for a great tool!! --------------------- Robert Kirk DeLisle, PhD
