Dear Folmer,
Thanks a lot for your comment. Thats exactly what I was looking for and
works perfectly. Thank you heaps.
Regards
Nagesh
Folmer Fredslund wrote:
Dear Nagesh
Just a short comment.
If you want the orientation you can write
get_view
and the orientation will be printed to the GUI.
Then all you have to do is put it at the end of your script
Best regards,
Folmer
Nagesh Chakka wrote:
Dear Joel,
Thanks for you email. I now installed version 0.99 and my problem is
solved.
Regards
Nagesh
Joel Tyndall wrote:
Dear Nagesh,
If you upgrade to the latest version (0.99) there is an option do
display the disulfides under the show menu
J
Nagesh Chakka wrote:
Hi Jerome,
Thanks for the mail. The web address you gave is about obtaining
information about Cys involved in bond formation. In my case, I do
know which pair of Cys are involved in it and this information is
also provided in the PDB file but I am unable to display the bridge
in the PyMOL viewer.
Also I need to display the structure in a particular orientation.
Can this information be be added in my script.
Thanks
Nagesh
Jerome Pansanel wrote:
Hello,
You can find some documentation about sulfur bonds on this page:
http://www.pymolwiki.org/index.php/Process_All_Files_In_Directory
If you are not successfull by using this resource, don't hesitate
to post
again.
Cheers,
Jerome Pansanel
Selon Nagesh Chakka <nagesh.cha...@anu.edu.au>:
Hello everyone,
I am unable to display disulphide bonds using PyMOL (version
0.97). My understanding is that PyMOL can connect Cys that are
within bonding distance. The PDB file (ID 1AG2) defines residues
involved in the SSBond
formation. I also tried to use the command "bond" to connect
the residues but without any success. I am not sure if I am doing
anything wrong. Any suggestion in this regard is appreciated.
Thanks
Nagesh
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