Ronald, You can try the yale morph server:
http://molmovdb.mbb.yale.edu/molmovdb/morph/ There are probably other tools that will perform linear interpolation of structures and output "intermeditate" .pdb files, which could be cleaned up and used in pymol to create a similar, but more user controlled movie. Hope this helps, -bob On 6/27/06, Ronald Chiu <[email protected]> wrote:
Hello All, Is there a way to show the three dimesional (x, y, z) coordinates for a selected alpha carbon? Lets say that you have two homologous structures aligned; one crystal structure in unbound state and the other in agonist bound state. How would you show the movement (change in positon of a residue) between the two states. Thanks for your help. Ron Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ PyMOL-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/pymol-users
