Hi Petro,
run expects a python script (.py), whereas you're trying to run a
pymol script (.pml). For that you nead '@':
@c:\pict.pml
Cheers,
Tsjerk
On 7/6/06, Piter_ <[email protected]> wrote:
Hi all
I have some errors if I run script:
PyMOL>run c:\pict.pml
Traceback (most recent call last):
File "C:\Program Files\DeLano
Scientific\PyMOL/modules\pymol\parser.py", line 273, in
parse
parsing.run_file
(exp_path(args[nest][0]),pymol_names,pymol_names)
File "C:\Program Files\DeLano
Scientific\PyMOL/modules\pymol\parsing.py", line 407, in
run_file
execfile(file,global_ns,local_ns)
File "c:\pict.pml", line 1
show sticks,tups1
^
SyntaxError: invalid syntax
PyMOL>show sticks,tups1 (if i run it in command line it works)
or the same:
PyMOL>run c:\pict.pml
Traceback (most recent call last):
File "C:\Program Files\DeLano
Scientific\PyMOL/modules\pymol\parser.py", line 273, in
parse
parsing.run_file
(exp_path(args[nest][0]),pymol_names,pymol_names)
File "C:\Program Files\DeLano
Scientific\PyMOL/modules\pymol\parsing.py", line 407, in
run_file
execfile(file,global_ns,local_ns)
File "c:\pict.pml", line 1
select cyt100,1HRC_Cys8_TUPS_W_1_MD_100 not resn
ben+sul+thi+npr+wat+hem
^
SyntaxError: invalid syntax
The script:
show sticks, tups1
show surface, cyt100
png tups1.png
hide sticks, all
hide surface, all
tups1 and cyt100 are named selections.
Thanks for help.
Petro
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--
Tsjerk A. Wassenaar, M.Sc.
Groningen Biomolecular Sciences and Biotechnology Institute (GBB)
Dept. of Biophysical Chemistry
University of Groningen
Nijenborgh 4
9747AG Groningen, The Netherlands
+31 50 363 4336
