Hi Mikael,
As far as I'm aware that is not possible (and definitely not with
"run", see 'help run'). What you can do is to define a function in
test.py, which takes the arguments you want. Then, after running the
script you can use the function as you please. If, in addition, you
add to the end of the script a line like:
cmd.extent("test",test)
Provided that the function you defined is named "test" and you have
before imported the module "cmd" (from pymol import cmd), you can then
give statements on the pymol command line such as:
test myfile.pdb
Hope it helps,
Tsjerk
On 7/14/06, Mikael Hansen <sonnehan...@gmail.com> wrote:
Hi all,
is there a way to run Python scripts with options in PyMOL, e.g.
run test.py -i [PDB file name]
? When I naïvely run the above I get
no file 'test.py -i [PDB file name]' found.
Thanks,
Mikael Sonne Hansen
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Tsjerk A. Wassenaar, M.Sc.
Groningen Biomolecular Sciences and Biotechnology Institute (GBB)
Dept. of Biophysical Chemistry
University of Groningen
Nijenborgh 4
9747AG Groningen, The Netherlands
+31 50 363 4336
