You can use the builder functionality to add a carbonyl and then a
methyl to your lysine amine terminus. Unfortuantely you cannot optimize
in Pymol. You could use Prodrug or CNS if you have some experience.
Cheers
Joel
LIU Changdong wrote:
Hi,evreyone:
I've got a pdb file of short peptide (11aa),I want to add an acetyl group
on Lys residue and optimize the structure.Is there anyone who can tell me
how to do it?
Best
Dong
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Joel Tyndall, PhD
Lecturer
National School of Pharmacy
University of Otago
PO Box 913 Dunedin 9054
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Pukenga
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Te Whare Wananga o Otago
Pouaka Poutapeta 913 Otepoti 9054
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