the problem in this case is to recognize the rejected atoms by eye, if you align about 400 c-alphas with average RMSDs of 0.2A. a printable list would be more helpful. but i guess this is not possible. but thanks a lot for your answer.
On Thursday 03 August 2006 17:25, you wrote: > This is not a great answer, but do you know about the object parameter > for the align command? I often type something like > > align struct1, struct2, object=alignment > > and then just look at which things were included/excluded. > > -michael > > On 8/3/06, Marc Bruning <brun...@mpghdb.desy.de> wrote: > > hello, > > > > is there any way to find out which atoms are discarded during the > > refinement cycles of the "align" command? > > > > regards, > > marc > > > > ------------------------------------------------------------------------- > > Take Surveys. Earn Cash. Influence the Future of IT > > Join SourceForge.net's Techsay panel and you'll get the chance to share > > your opinions on IT & business topics through brief surveys -- and earn > > cash > > http://www.techsay.com/default.php?page=join.php&p=sourceforge&CID=DEVDEV > > _______________________________________________ > > PyMOL-users mailing list > > PyMOL-users@lists.sourceforge.net > > https://lists.sourceforge.net/lists/listinfo/pymol-users
