Hello all,
I am trying to select all atoms with 4 Angstroms from a particular atom,
in this case the O of the OH group in a tyrosine residue. I executed the
following commands
select oh, id 341
select close, all within 4 of oh
where the first command creates a named selection for the particular
atom I am interested in and the second selects the nearby atoms. My
problem is, there seems to be too many atoms selected and, when I check
a few bond distances, I definitely have atoms selected further than 4
Angstroms away.
What am I doing wrong?
Also, once the selection is correct, is there any easy way to get a text
list of all of these nearby atoms?
Thanks for your help.
Regards,
Jonathan
--
Dr Jonathan Arthur
Sydney Bioinformatics
Medical Foundation Building, K25
University of Sydney NSW 2006
Phone: +61 2 9036 3132
Fax: +61 2 9036 3233
Email: jart...@med.usyd.edu.au
