Dear Sir,
* I want too assign the secondary structure of my protein according
to DSSP classification, I used the following commands*
* alter A/22:28/, ss='S'*
* or*
*alter A/45:50?, ss= 'H' *
*and so on followed by *
* rebuild*
* cartoon automatic*
* show cartoon*
* But the problem is that the structure remains the same, without
any alteration.*
* I tried the same commands in case of other proteins, where it
works, but it failed in case of my protein. The protein is a globular
one with 70 rsidues, having a crystal structure. It has a single
chain only, so I used alter /22:28/, ss= 'S' , I am interested to know
what type of classification does Pymol follow for secondary structure
classification , and where the problem lies so that I can not alter my
structure. Thanks in advance.*
**
**
*regards*
*SANGEETA *
