Madhavi,
Not sure if anyone has replied to your post. i think there are at least two
ways to scan the available rotamers (at least with Windows XP). Once you
have made the mutation...
1- use the arrow keys to change rotamers
2- use the forward (>) and back (<) arrows on the frame selection control
panel (similar to DVD controls) at the bottom-right of the PyMol Viewer
Window.
from my experience, either one will work and allow you to scan the rotamers.
the various rotamers usually have a number associated, which describes the
variance of each rotamer documented thus far (i think). If you aren't happy
with any of the rotamers, just cancel everything by hitting [Clear] and then
[Done].
Hope some of this helps, best of luck!
Cheers,
Nick
----- Original Message -----
From: "Nalam, Madhavi" <madhavi.na...@umassmed.edu>
To: <pymol-users@lists.sourceforge.net>
Sent: Tuesday, May 01, 2007 4:38 PM
Subject: [PyMOL] mutagenesis
Hello:
I am trying to mutate ALA to VAL in PyMOL. I would like to see possible
rotamers for Val. Is it possible to do this in PyMOL?
I am using mutagenesis option in PyMOL. Once I select the Val residue,
it asks to select a conformational state. I assume this is for various
rotamers. But how do I choose a conformational state?
Thanks in advance,
Madhavi
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