64-bit machines can still run 32-bit executables, and you may actually be running a 32-bit version of PyMOL, hence the mismatch.
Steve -----Original Message----- From: pymol-users-boun...@lists.sourceforge.net [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of Oganesyan, Vaheh Sent: Thursday, May 31, 2007 10:43 AM To: Robert Campbell Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] APBS Dear Robert, Thank you for your note. You were right. I downloaded i386 for my Linux computer and it runs. The funny part is that my computer has 64 bit Xeon processor. Go figure ... Vaheh Oganesyan -----Original Message----- From: pymol-users-boun...@lists.sourceforge.net [mailto:pymol-users-boun...@lists.sourceforge.net]on Behalf Of Robert Campbell Sent: Wednesday, May 30, 2007 11:06 AM To: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] APBS Hi Vaheh, * Oganesyan, Vaheh <oganesy...@medimmune.com> [2007-05-30 09:45] wrote: > I did not get much luck with those recommendations either. I was doing exactly the same. Something is phishy with my pymol and/or APBS installation. I did check for different pdb files, so it is not pdb related. The roor message is below: > ======================================================================== ====================================== > Running ('/usr/bin/APBS/apbs-0.5.0/bin/apbs', '/home/Vaheh/Work/Fc3M/pymol-generated.in') > OSError Exception in Tk callback > Function: <function <lambda> at 0xf608448c> (type: <type 'function'>) > Args: () > Traceback (innermost last): > File "/usr/bin/pymol/ext/lib/python2.4/site-packages/Pmw/Pmw_1_2/lib/PmwBase. py", line 1747, in __call__ > return apply(self.func, args) > File "/usr/bin/pymol/ext/lib/python2.4/site-packages/Pmw/Pmw_1_2/lib/PmwDialo g.py", line 153, in <lambda> > command=lambda self=self, name=name: self._doCommand(name)) > File "/usr/bin/pymol/ext/lib/python2.4/site-packages/Pmw/Pmw_1_2/lib/PmwDialo g.py", line 132, in _doCommand > return command(name) > File "/usr/bin/pymol/modules/pmg_tk/startup/apbs_tools.py", line 1101, in execute > (retval,progout) = run(self.binary.getvalue(),(self.pymol_generated_in_filename.getvalue(), )) > File "/usr/bin/pymol/modules/pmg_tk/startup/apbs_tools.py", line 317, in run > retcode = subprocess.call(args,stdout=output_file.fileno(),stderr=subprocess.STDOU T) > File "/usr/bin/pymol/ext/lib/python2.4/subprocess.py", line 412, in call > return Popen(*args, **kwargs).wait() > File "/usr/bin/pymol/ext/lib/python2.4/subprocess.py", line 542, in __init__ > errread, errwrite) > File "/usr/bin/pymol/ext/lib/python2.4/subprocess.py", line 975, in _execute_child > raise child_exception > OSError: [Errno 8] Exec format error ^^^^^^^^^^^^^^^^^^ This error would seem to indicate that you are running PyMOL on one kind of computer but the apbs executable was compiled for a different one. Are you perhaps mixing i686 and x86_64 Linuxes, for example? Cheers, Rob -- Robert L. Campbell, Ph.D. Senior Research Associate/Adjunct Assistant Professor Botterell Hall Rm 644 Department of Biochemistry, Queen's University, Kingston, ON K7L 3N6 Canada Tel: 613-533-6821 Fax: 613-533-2497 <robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc ------------------------------------------------------------------------ - This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users ------------------------------------------------------------------------ - This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of your XML. No limits. Just data. Click to get it now. http://sourceforge.net/powerbar/db2/ _______________________________________________ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users ------------------------------------------------------------------------------ Notice: This e-mail message, together with any attachments, contains information of Merck & Co., Inc. (One Merck Drive, Whitehouse Station, New Jersey, USA 08889), and/or its affiliates (which may be known outside the United States as Merck Frosst, Merck Sharp & Dohme or MSD and in Japan, as Banyu - direct contact information for affiliates is available at http://www.merck.com/contact/contacts.html) that may be confidential, proprietary copyrighted and/or legally privileged. It is intended solely for the use of the individual or entity named on this message. If you are not the intended recipient, and have received this message in error, please notify us immediately by reply e-mail and then delete it from your system. ------------------------------------------------------------------------------
